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2019
Editorial - Methods and models in sleep research
Authors: Aton, S.J., Di Giovanni G., Leresche N. Methods and models in sleep research - Methods - Editorial
Aton, S.J., Di Giovanni G., Leresche N. - 2019
A sleep spindle detection algorithm that emulates human expert spindle scoring
Authors: Lacourse, K., Delfrate J., Beaudry J., Peppard P., Warby S.C. Sleep spindle detection by means of human spindle scoring algorithm "A7" - Methods
Lacourse, K., Delfrate J., Beaudry J., Peppard P., Warby S.C. - 2019
Delay differential analysis dor dynamical sleep spindle detection
Authors: Sampson, A.L:, Lainscsek C., Gonzalez C.E., Ulbert I., Devinsky O., Fabo D., Madsen J.R., Halgren E., Cash S.S., Sejnowski T.J. Sleep spindles in human intracranial sleep data non-frequency-based detection - Methods
Sampson, A.L:, Lainscsek C., Gonzalez C.E., Ulbert I., Devinsky O., Fabo D., Madsen J.R., Halgren E., Cash S.S., Sejnowski T.J. - 2019
Slow wave detection in sleeping mice: comparison of traditional and machine learning methods
Authors: Bukhtiyarova, O., Soltani S., Chauvette S., Timofeev I. Slow-wave detection based on neural network pattern recognition in sleeping mice: comparison to traditional methods - Methods
Bukhtiyarova, O., Soltani S., Chauvette S., Timofeev I. - 2019
Simulating human sleep spindle MEG and EEG from ion channel and circuit level dynamics
Authors: Rosen, B.Q., Krishnan G.P., Sanda P., Komarov M., Sejnowski T., Rulkov N., Ulbert I., Eross L., Madsen J., Devinsky O., Doyle W., Fabo D., Cash S., Bazhenov M., Halgren E. Integrated multiscale sleep spindle human MEG and EEG simulating model MRI cortical surface reconstruction - Methods
Rosen, B.Q., Krishnan G.P., Sanda P., Komarov M., Sejnowski T., Rulkov N., Ulbert I., Eross L., Madsen J., Devinsky O., Doyle W., Fabo D., Cash S., Bazhenov M., Halgren E. - 2019
Fine-scale mapping of cortical laminar activity during sleep slow oscillations using high-density linear silicon probes
Authors: Fiath, R., Raducanu B.C., Musa S., Andrei A., Lopez C.M., Welkenhuysen M., Ruther P., Aarts A., Ulbert I. Sleep slow phase cortical laminar activity mapping by means of high-density linea silicon probes in rats - Methods
Fiath, R., Raducanu B.C., Musa S., Andrei A., Lopez C.M., Welkenhuysen M., Ruther P., Aarts A., Ulbert I. - 2019
All-night functional magnetic resonance imaging sleep studies
Authors: Moehlman, T.M., de Zwart J.A., Chappel-Farley M.G., Liu X., McClain I.B., Chang C., Mandelkow H., Ozbay P.S., Johnson N.L., Bieber R.E., Fernandez K.A., King K.A., Zalewski C.K., Brewer C.C., van Gelderen P., Duyn J.H., Picchioni D. All-night fMRI sleep studies in humans: methodological validation
Moehlman, T.M., de Zwart J.A., Chappel-Farley M.G., Liu X., McClain I.B., Chang C., Mandelkow H., Ozbay P.S., Johnson N.L., Bieber R.E., Fernandez K.A., King K.A., Zalewski C.K., Brewer C.C., van Gelderen P., Duyn J.H., Picchioni D. - 2019
ONEIROS, a new miniature standalone device for recording sleep electrophysiology, physiology, temperatures and behavior in the lab and field
Authors: Massot, B., Arthaud S., Barrillot B., Roux J., Ungurean G., Luppi P.-H., Rattenborg N.C., Libourel P.-A. Miniature standalone device ONEIROS for during sleep phase multiple aspect record/behavior, electrophysiology, metabolism in small animals (rodents/pigeons) - Methods
Massot, B., Arthaud S., Barrillot B., Roux J., Ungurean G., Luppi P.-H., Rattenborg N.C., Libourel P.-A. - 2019
Insights on auditory closed-loop stimulation targeting sleep pindles in slow oscillation up-states
Authors: Ngo, H.-V.V., Seibold M., Boche D.C., Molle M., Born J. Auditory spindle stimulation during sleeping cortical slow oscillations on endogenous spindle activity and overning memory consolidation performance in humans - Methods
Ngo, H.-V.V., Seibold M., Boche D.C., Molle M., Born J. - 2019
Stimulating the sleeping brain: current approaches to modulating memory-related sleep physiology
Authors: Cellini, N., Mednick S.C. During sleep multimodal brain stimulation and memory consolidation modulation - Methods - Review
Cellini, N., Mednick S.C. - 2019
Monitoring deep brain stimulation by measuring regional brain oxygen responses in freely moving mice
Authors: Bazzu, G., Serra P.A., Hamelink R., Feenstra M.G.P., Willuhn I., Denys D. Brain oxygen amperometric measurement related to deep brain stimulation, stress exposure or exploratory activity in rodents - Methods
Bazzu, G., Serra P.A., Hamelink R., Feenstra M.G.P., Willuhn I., Denys D. - 2019
Joint modeling of reaction times and choice improves parameter identifiability in reinforcement learning models
Authors: Ballard, I.C., McClure S.M. Reinforcement learning model relating parameters to neural/psychological variables/measures by means of Bayesian priors and reaction time: mathematical/computational model - Methods
Ballard, I.C., McClure S.M. - 2019
Effective chair training methods for neuroscience research involving rhesus macaques (Macaca mulatta)
Authors: Mason, S., Premereur E., Pelekanos V., Emberton A., Honess P., Mitchell A.S. Acclimation to chair training procedural methods for monkeys - Methods
Mason, S., Premereur E., Pelekanos V., Emberton A., Honess P., Mitchell A.S. - 2019
Behavioral neuroimaging in birds using PET
Authors: Salerno, M., Ferrer E., Wei S., Li X., Gao W., Ouellette D., Balanoff A., Vaska P. Brain imaging by means of PET imaging with F-18 labeled fluorodeoxyglucose in birds - Methods
Salerno, M., Ferrer E., Wei S., Li X., Gao W., Ouellette D., Balanoff A., Vaska P. - 2019
A novel control condition for spatial learning in the Morris water maze
Authors: Barry, D.N., Commins S. Rodent Morris water maze spatial learning novel control condition - Methods
Barry, D.N., Commins S. - 2019
Neuromelanin-sensitive MRI as a noninvasive proxy measure of dopamine function in the human brain
Authors: Cassidy, C.M., Zucca F.A., Girgis R.R., Baker S.C., Weinstein J.J., Sharp M.E., Bellei C., Val madre A., Vanegas N., Kegeles L.S., Brucato G., Kang U.J., Sulzer D., Zecca L., Abi-Dargham A., Horga G. Dopamine metabolite neuromelanin-sensitive MRI as substantia nigra integrity marker in humans - Methods
Cassidy, C.M., Zucca F.A., Girgis R.R., Baker S.C., Weinstein J.J., Sharp M.E., Bellei C., Val madre A., Vanegas N., Kegeles L.S., Brucato G., Kang U.J., Sulzer D., Zecca L., Abi-Dargham A., Horga G. - 2019
Fast near-whole-brain imaging in adult Drosophila during responses to stimuli and behavior
Authors: Aimon, S., Katsuki T., Jia T., Grosenick L., Broxton M., Deisseroth K., Sejnowski T.J., Greenspan R.J. Whole brain imaging recroding of behaving adult Drosophila - Methods
Aimon, S., Katsuki T., Jia T., Grosenick L., Broxton M., Deisseroth K., Sejnowski T.J., Greenspan R.J. - 2019
High resolution approaches for the identification of amyloid fragments in brain
Authors: Ross, J.A., Mathews P.M., Van Bockstaele E.J. Immunoelectron microscopy combined with new antibodies new method to extimate amyloid precursor protein accumulation in the brain - Methods
Ross, J.A., Mathews P.M., Van Bockstaele E.J. - 2019
Light sheet fluorescence microscopy for neuroscience
Authors: Corsetti, S., Gunn-Moore F., Dholakia K. Application of light sheet fluorescence microscopy in neuroscience - Methods - Review
Corsetti, S., Gunn-Moore F., Dholakia K. - 2019
Submerged plus maze: a novel test for studying anxiety-like behaviour in fish
Authors: Hope, B.V., Hamilton T.J., Hurd P.L. Submerged plus maze to valuate exploratory activity and anxiety in fishes - Methods
Hope, B.V., Hamilton T.J., Hurd P.L. - 2019
Functional assessments through novel proteomics approaches: application to insulin/IGF signaling in neurodegenerative disease
Authors: Ayyadevara, S., Ganne A., Hendrix R.D., Balasubramaniam M., Reis R.J.S., Barger S.W. Phosphatidylinositol triphoshapte, binding/insulin/insulin-like growth factor signaling proteomics analysis to estimate neurodegenerative disorders - Methods
Ayyadevara, S., Ganne A., Hendrix R.D., Balasubramaniam M., Reis R.J.S., Barger S.W. - 2019
Of mice and motion: behavioural-EEG phenotyping of Alzheimer's disease mouse models
Authors: Crouch, B., Yeap J.M., Pais B., Riedel G., Platt B. Prefrontal/hippocampal gamma power related to movement speed and direction to identify neurodegenerative disorders in mouse models - Methods
Crouch, B., Yeap J.M., Pais B., Riedel G., Platt B. - 2019
Unsupervised learning by competing hidden units
Authors: Krotov, D., Hopfield J.J. Hebbian biologcal plasuiblie learning algorithm - Methods
Krotov, D., Hopfield J.J. - 2019
Stereotaxy in rat models: current ste of the art, proposals to improve trageting accuracy and reporting guideline
Authors: De Vloo, P., Nuttin B. Stereotaxic targeting accuracy in the rat brain - Review - Methods
De Vloo, P., Nuttin B. - 2019
Fast and robust active neuron segmentation in two-photon calcium imaging using spatiotemporal deep learning
Authors: Soltanian-Zadeh, S., Sahingur K., Blau S., Gong Y., Farsiu S. Automated, fast active neuron segmentation to analyse work flow neuornal signals: two-photon calcium imaging study - Methods
Soltanian-Zadeh, S., Sahingur K., Blau S., Gong Y., Farsiu S. - 2019
Impact of long-term behavioural studies in the wild: the blue petrel, Halobaena caerulea, case at Kerguelen
Authors: Berges, M., Choquet R., Bonadonna F. Long-term experimental manipulation human impact on social behavior in free wild living blue petrel seabirds
Berges, M., Choquet R., Bonadonna F. - 2019
Abnormal repetitive behaviors in zebrafish and their relevance to human brain disorders
Authors: Zabegalov, K.N., Khatsko S.L., Lakstygal A.M., Demin K.A., Cleal M., DìFontana B.D., McBride S.D., Harvey B.H., de Abreu M.S., Parker M.O., Kalueff A.V. Stereotypic repetitive behavior spectrum in zebrafish as animal model for human brain disorders - Review
Zabegalov, K.N., Khatsko S.L., Lakstygal A.M., Demin K.A., Cleal M., DìFontana B.D., McBride S.D., Harvey B.H., de Abreu M.S., Parker M.O., Kalueff A.V. - 2019
SEXRAT male: a smartphone and tablet application to annotate and process live sexual behavior in male rodents
Authors: Buenrostro-Jauregui, M., Tapia-de Jesus A., Mata F., Gavia M., Galizia-Castillo O., Hernandez-Guerrero C., Rodriguez-Serrano L.M. Male rat sexual behavior smartphone/tablet application new method - Methods
Buenrostro-Jauregui, M., Tapia-de Jesus A., Mata F., Gavia M., Galizia-Castillo O., Hernandez-Guerrero C., Rodriguez-Serrano L.M. - 2019
A teensy microcontroller-based interface for optical imaging camera control during behavioral experiments
Authors: Romano, M., Bucklin M., Gritton H., Mehrotra D., Kessel R., Han X. Tone-puff eyeblink trace conditioning automated microcontroller-based interface controller camera devicing rodent behavior - Methods
Romano, M., Bucklin M., Gritton H., Mehrotra D., Kessel R., Han X. - 2019
Data-driven derivation of natural EEG frequency components: an optimised example assessing resting EEG in healthy ageing
Authors: Barry, R.J., De Blasio F.M., Karamacoska D. EEG component analysis in young and ageing humans: frequency principal components analysis - Methods
Barry, R.J., De Blasio F.M., Karamacoska D. - 2019